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To give one possible answer to your questions. It is possible that you are just having a very long cycle, where your body tried to ovulate but didn't for whatever reason (stress is usually the cause). Once your body finally ovulates (realeases the egg) within 12-14 days you get your period. My last cycle was 60 days long but I didn't ovulate till day 47 of my cycle.
That is why you have "missed your period" but are having negative hpt. You haven't really missed your period you just ovulated very late.

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